Y Katsura, C. E. Stanley, Jr., S. Kumar, and M. Nei. 2017. The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data. Molecular Biology and Evolution msw272.

Stanley, Jr., C. E. & R. J. Kulathinal, 2016. Neurogenomics and the role of a large mutational target on rapid behavioral change. BMC Biology Direct 11(1): 60.

Chaurio, R.A., M. A. Pacheco, O. E. Cornejo, E. Durrego, C. E. Stanley, Jr., A. I. Castillo, S. Herrera, and A. A. Escalante. 2016. Evolution of the transmission-blocking vaccine candidates Pvs28 and Pvs25 in Plasmodium vivax: geographic differentiation and evidence of positive selection. PLoS Neglected Tropical Diseases 10(6): e0004786.

Stanley, Jr., C. E & R. J. Kulathinal. 2016. flyDIVaS: A comparative genomics resource for Drosophila divergence and selection. G3:Gene|Genomes|Genetics g3-116.

Stanley, Jr., C. E, C. H. S. King, IV, M. Thornton, and R. J. Kulathinal. 2016. Behavioral genetics: Investigating the genes of a complex phenotype in fruit flies. Genetics Society of America Peer Reviewed Education Portal (GSA Prep).

Stanley, Jr., C. E. & R. J. Kulathinal. 2016. Genomic signatures of domestication on neurogenetic genes in Drosophila melanogaster. BMC Evolutionary  Biology 16(6).

Roehrs, Z. P, J. B. Lack, C. E. Stanley, Jr.,  and R. A. Van Den Bussche. Mammals of Red Slough Wildlife Management Area. 2012. Texas Tech Occasional Papers.

Lack, J. B., Z. P. Roehrs, C. E. Stanley, Jr., M. Ruedi, and R. A. Van Den Bussche.  2010. Molecular phylogenetics of Myotis suggest familial-level divergence for the genus Cistugo (Chiroptera). Journal of Mammalogy 91(4): 976-992.

Van Den Bussche, R. A., J. B. Lack, C. E. Stanley, Jr., J. E. Wilkinson, P. Truman, L. M. Smith, and S. T. McMurry. 2009. Development and characterization of 10 polymorphic tetranucleotide microsatellite markers for the New Mexico spadefoot toad (Spea multiplicata).  Conservation Genetics Resources 1: 71-73.